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Publications using the natverse

The following 129 publications used the natverse or its direct ancestor (the R AnalysisSuite). If you use a natverse package in one of your papers, then please let us know. You can even add a bibtex formatted record for your publication straight to the top of our bibliography file by following this link. Thanks!

2026

  1. Uncovering the molecular logic of cortical wiring between neuronal subtypes across development through ligand–receptor inference. Mathieu et al., Nature Communications (2026). 10.1038/s41467-025-68059-8
  2. Neural connectome of the ctenophore statocyst. Jokura et al., eLife (2026). 10.7554/elife.108420.3
  3. Segmentally repeated ventral nerve cord circuits drive different leg rubbing behaviors in Drosophila grooming. Guo et al., iScience (2026). 10.1016/j.isci.2026.114902
  4. Integrative analysis of single-neuron projectomes links connectome, transcriptome, and function in the mouse cortex. Gao et al., Neuron (2026). 10.1016/j.neuron.2025.10.019
  5. Drosophila DNp03 descending neurons serve as a hub within a flight saccade network. Croke et al., Current Biology (2026). 10.1016/j.cub.2025.11.035
  6. Specialized parallel pathways for adaptive control of visual object pursuit. Collie et al., Neuron (2026). 10.1016/j.neuron.2026.01.001

2025

  1. Eye structure shapes neuron function in Drosophila motion vision. Zhao et al., Nature (2025). 10.1038/s41586-025-09276-5
  2. Impact of developmental temperature on neural growth, connectivity, and function. Züfle et al., Science Advances (2025). 10.1126/sciadv.adp9587
  3. Whole-body connectome of a segmented annelid larva. Verasztó et al., eLife (2025). 10.7554/elife.97964
  4. Spatial constraints and cell surface molecule depletion structure a randomly connected learning circuit. Thornton-Kolbe et al., Current Biology (2025). 10.1016/j.cub.2025.05.062
  5. Connectomics Reveals a Feed-Forward Swallowing Circuit Driving Protein Appetite. Tastekin et al., bioRxiv (2025). 10.1101/2025.08.25.671815
  6. A neural circuit for context-dependent multimodal signaling in Drosophila. Steinfath et al., Nature Communications (2025). 10.1038/s41467-025-64907-9
  7. Comparative connectomics of Drosophila descending and ascending neurons. Stürner et al., Nature (2025). 10.1038/s41586-025-08925-z
  8. Distinct circuit motifs evaluate opposing innate values of odors. Someya et al., Cell (2025). 10.1016/j.cell.2025.08.032
  9. Transcriptomic neuron types vary topographically in function and morphology. Shainer et al., Nature (2025). 10.1038/s41586-024-08518-2
  10. Cross-species comparative connectomics reveals the evolution of an olfactory circuit. Roberts et al., bioRxiv (2025). 10.1101/2025.06.11.659158
  11. Neural circuit mechanisms for steering control in walking Drosophila. Rayshubskiy et al., eLife (2025). 10.7554/elife.102230.2
  12. Expression of clock genes tracks daily and tidal time in brains of intertidal crustaceans Eurydice pulchra and Parhyale hawaiensis. Oliphant et al., Current Biology (2025). 10.1016/j.cub.2025.04.047
  13. Divergent synaptic dynamics originate parallel pathways for computation and behavior in an olfactory circuit. Kim et al., Current Biology (2025). 10.1016/j.cub.2025.05.051
  14. A cell type in the visual system that receives feedback about limb movement. Hartman et al., Current Biology (2025). 10.1016/j.cub.2025.06.055
  15. Inhibitory control explains locomotor statistics in walking Drosophila. Gattuso et al., Proceedings of the National Academy of Sciences (2025). 10.1073/pnas.2407626122
  16. Synaptic density and relative connectivity conservation maintain circuit stability across development. Fritz et al., eLife (2025). 10.7554/elife.108643
  17. A competitive disinhibitory network for robust optic flow processing in Drosophila. Erginkaya et al., Nature Neuroscience (2025). 10.1038/s41593-025-01948-9
  18. Genetic targeting of astrocytes associated with specific neuronal circuit in adult Drosophila. Dopp et al., bioRxiv (2025). 10.1101/2025.02.12.637801
  19. Control of walking direction by descending and dopaminergic neurons in Drosophila. Dahlhoff et al., bioRxiv (2025). 10.1101/2025.07.22.666129
  20. Olfactory projection neuron rewiring in the brain of an ecological specialist. Dürr et al., Cell Reports (2025). 10.1016/j.celrep.2025.115615
  21. Transforming descending input into motor output: An analysis of the Drosophila Male Adult Nerve Cord connectome. Cheong et al., eLife (2025). 10.7554/elife.96084.2
  22. Neural control of coordinated wing and leg movements during a terrestrial threat display. Cao et al., bioRxiv (2025). 10.1101/2025.10.25.684556
  23. A comprehensive mechanosensory connectome reveals a somatotopically organized neural circuit architecture controlling stimulus-aimed grooming of the Drosophila head. Calle-Schuler et al., eLife (2025). 10.7554/elife.108044
  24. A Developmental Atlas of the Drosophila Nerve Cord Uncovers a Global Temporal Code for Neuronal Identity. Cachero et al., bioRxiv (2025). 10.1101/2025.07.16.664682
  25. Distributed control circuits across a brain-and-cord connectome. Bates et al., bioRxiv (2025). 10.1101/2025.07.31.667571

2024

  1. A comprehensive neuroanatomical survey of the Drosophila Lobula Plate Tangential Neurons with predictions for their optic flow sensitivity. Zhao et al., Unknown journal (2024). 10.7554/elife.93659
  2. Fine-grained descending control of steering in walking Drosophila. Yang et al., Cell (2024). 10.1016/j.cell.2024.08.033
  3. Molecular and cellular mechanisms of teneurin signaling in synaptic partner matching. Xu et al., Cell (2024). 10.1016/j.cell.2024.06.022
  4. Transforming a head direction signal into a goal-oriented steering command. Westeinde et al., Nature (2024). 10.1038/s41586-024-07039-2
  5. Neurons Underlying Aggression-Like Actions That Are Shared by Both Males and Females in Drosophila. Tao et al., The Journal of Neuroscience (2024). 10.1523/jneurosci.0142-24.2024
  6. Whole-brain annotation and multi-connectome cell typing of Drosophila. Schlegel et al., Nature (2024). 10.1038/s41586-024-07686-5
  7. Neural circuit mechanisms underlying context-specific halting in Drosophila. Sapkal et al., Nature (2024). 10.1038/s41586-024-07854-7
  8. Mapping of multiple neurotransmitter receptor subtypes and distinct protein complexes to the connectome. Sanfilippo et al., Neuron (2024). 10.1016/j.neuron.2023.12.014
  9. Synaptic connectome of the Drosophila circadian clock. Reinhard et al., Nature Communications (2024). 10.1038/s41467-024-54694-0
  10. Compensatory enhancement of input maintains aversive dopaminergic reinforcement in hungry Drosophila. Meschi et al., Neuron (2024). 10.1016/j.neuron.2024.04.035
  11. Synaptic connectome of a neurosecretory network in the Drosophila brain. McKim et al., Unknown journal (2024). 10.7554/elife.102684
  12. Systematic annotation of a complete adult male Drosophila nerve cord connectome reveals principles of functional organisation. Marin et al., Unknown journal (2024). 10.7554/elife.97766
  13. Multivariate classification of multichannel long-term electrophysiology data identifies different sleep stages in fruit flies. Jagannathan et al., Science Advances (2024). 10.1126/sciadv.adj4399
  14. The neuropeptide pigment‐dispersing factor signals independently of Bruchpilot‐labelled active zones in daily remodelled terminals of Drosophila clock neurons. Hofbauer et al., European Journal of Neuroscience (2024). 10.1111/ejn.16294
  15. Gapr for large-scale collaborative single-neuron reconstruction. Gou et al., Nature Methods (2024). 10.1038/s41592-024-02345-z
  16. Diversity of visual inputs to Kenyon cells of the Drosophila mushroom body. Ganguly et al., Nature Communications (2024). 10.1038/s41467-024-49616-z
  17. Convergent olfactory circuits for courtship in Drosophila revealed by ds -Tango. Fisher et al., Unknown journal (2024). 10.1101/2024.10.23.619891
  18. Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila. Eichler et al., eLife (2024). 10.7554/elife.87602
  19. Neurotransmitter classification from electron microscopy images at synaptic sites in Drosophila melanogaster. Eckstein et al., Cell (2024). 10.1016/j.cell.2024.03.016
  20. Neuronal wiring diagram of an adult brain. Dorkenwald et al., Nature (2024). 10.1038/s41586-024-07558-y
  21. A gut-brain-gut interoceptive circuit loop gates sugar ingestion in Drosophila. Cui et al., Unknown journal (2024). 10.1101/2024.09.02.610892
  22. Organization of an ascending circuit that conveys flight motor state in Drosophila. Cheong et al., Current Biology (2024). 10.1016/j.cub.2024.01.071
  23. Mapping the neural dynamics of locomotion across the Drosophila brain. Brezovec et al., Current Biology (2024). 10.1016/j.cub.2023.12.063
  24. BIFROST: A method for registering diverse imaging datasets of the Drosophila brain. Brezovec et al., Proceedings of the National Academy of Sciences (2024). 10.1073/pnas.2322687121
  25. Mechanism of barotaxis in marine zooplankton. Bezares Calderón et al., eLife (2024). 10.7554/elife.94306

2023

  1. Asymmetric Presynaptic Depletion of Dopamine Neurons in a Drosophila Model of Parkinson’s Disease. Zhang et al., International Journal of Molecular Sciences (2023). 10.3390/ijms24108585
  2. MouseGAN++: Unsupervised Disentanglement and Contrastive Representation for Multiple MRI Modalities Synthesis and Structural Segmentation of Mouse Brain. Yu et al., IEEE Transactions on Medical Imaging (2023). 10.1109/tmi.2022.3225528
  3. Brain wiring determinants uncovered by integrating connectomes and transcriptomes. Yoo et al., Current Biology (2023). 10.1016/j.cub.2023.08.020
  4. Generating parallel representations of position and identity in the olfactory system. Taisz et al., Cell (2023). 10.1016/j.cell.2023.04.038
  5. retro-Tango enables versatile retrograde circuit tracing in Drosophila. Sorkaç et al., eLife (2023). 10.7554/elife.85041
  6. Heterogeneous receptor expression underlies non-uniform peptidergic modulation of olfaction in Drosophila. Sizemore et al., Nature Communications (2023). 10.1038/s41467-023-41012-3
  7. A single-cell resolution gene expression atlas of the larval zebrafish brain. Shainer et al., Science Advances (2023). 10.1126/sciadv.ade9909
  8. Multisensory learning binds neurons into a cross-modal memory engram. Okray et al., Nature (2023). 10.1038/s41586-023-06013-8
  9. Circuit analysis of the Drosophila brain using connectivity-based neuronal classification reveals organization of key communication pathways. Mehta et al., Network Neuroscience (2023). 10.1162/netn_a_00283
  10. Online conversion of reconstructed neural morphologies into standardized SWC format. Mehta et al., Nature Communications (2023). 10.1038/s41467-023-42931-x
  11. Rewarding Capacity of Optogenetically Activating a Giant GABAergic Central-Brain Interneuron in Larval Drosophila. Mancini et al., The Journal of Neuroscience (2023). 10.1523/jneurosci.2310-22.2023
  12. Visual feedback neurons fine-tune Drosophila male courtship via GABA-mediated inhibition. Mabuchi et al., Current Biology (2023). 10.1016/j.cub.2023.08.034
  13. Comparative single-cell transcriptomic atlases reveal conserved and divergent features of drosophilid central brains. Lee et al., Unknown journal (2023). 10.1101/2023.11.22.568274
  14. Dopaminergic systems create reward seeking despite adverse consequences. Jovanoski et al., Nature (2023). 10.1038/s41586-023-06671-8
  15. Hunger- and thirst-sensing neurons modulate a neuroendocrine network to coordinate sugar and water ingestion. González Segarra et al., eLife (2023). 10.7554/elife.88143
  16. A neuronal substrate for translating nutrient state and resource density estimations into foraging decisions. Goldschmidt et al., Unknown journal (2023). 10.1101/2023.07.19.549514
  17. Synaptic gradients transform object location to action. Dombrovski et al., Nature (2023). 10.1038/s41586-022-05562-8
  18. Virtual Fly Brain—An interactive atlas of the Drosophila nervous system. Court et al., Frontiers in Physiology (2023). 10.3389/fphys.2023.1076533
  19. Transsynaptic Assemblies Link Domains of Presynaptic and Postsynaptic Intracellular Structures across the Synaptic Cleft. Cole et al., The Journal of Neuroscience (2023). 10.1523/jneurosci.2195-22.2023

2022

  1. Structured sampling of olfactory input by the fly mushroom body. Zheng et al., Current Biology (2022). 10.1016/j.cub.2022.06.031
  2. Visual and motor signatures of locomotion dynamically shape a population code for feature detection in Drosophila. Turner et al., eLife (2022). 10.7554/elife.82587
  3. Taste quality and hunger interactions in a feeding sensorimotor circuit. Shiu et al., eLife (2022). 10.7554/elife.79887
  4. The Neuronal Circuit of the Dorsal Circadian Clock Neurons in Drosophila melanogaster. Reinhard et al., Frontiers in Physiology (2022). 10.3389/fphys.2022.886432
  5. Locomotor and olfactory responses in dopamine neurons of the Drosophila superior-lateral brain. Marquis et al., Current Biology (2022). 10.1016/j.cub.2022.11.008
  6. Connectomic features underlying diverse synaptic connection strengths and subcellular computation. Liu et al., Current Biology (2022). 10.1016/j.cub.2021.11.056
  7. Desmosomal connectomics of all somatic muscles in an annelid larva. Jasek et al., eLife (2022). 10.7554/elife.71231
  8. Olfactory stimuli and moonwalker SEZ neurons can drive backward locomotion in Drosophila. Israel et al., Current Biology (2022). 10.1016/j.cub.2022.01.035
  9. Descending neurons coordinate anterior grooming behavior in Drosophila. Guo et al., Current Biology (2022). 10.1016/j.cub.2021.12.055
  10. Walking strides direct rapid and flexible recruitment of visual circuits for course control in Drosophila. Fujiwara et al., Neuron (2022). 10.1016/j.neuron.2022.04.008
  11. Dopamine promotes head direction plasticity during orienting movements. Fisher et al., Nature (2022). 10.1038/s41586-022-05485-4
  12. Drosophila gustatory projections are segregated by taste modality and connectivity. Engert et al., eLife (2022). 10.7554/elife.78110
  13. The microbiota promotes social behavior by modulating microglial remodeling of forebrain neurons. Bruckner et al., PLOS Biology (2022). 10.1371/journal.pbio.3001838
  14. Neural network organization for courtship-song feature detection in Drosophila. Baker et al., Current Biology (2022). 10.1016/j.cub.2022.06.019
  15. Circadian programming of the ellipsoid body sleep homeostat in Drosophila. Andreani et al., eLife (2022). 10.7554/elife.74327

2021

  1. Information flow, cell types and stereotypy in a full olfactory connectome. Schlegel et al., eLife (2021). 10.7554/elife.66018
  2. A projectome of the bumblebee central complex. Sayre et al., eLife (2021). 10.7554/elife.68911
  3. Transforming representations of movement from body- to world-centric space. Lu et al., Nature (2021). 10.1038/s41586-021-04191-x
  4. Developmental Changes in Pyramidal Cell Morphology in Multiple Visual Cortical Areas Using Cluster Analysis. Khalil et al., Frontiers in Computational Neuroscience (2021). 10.3389/fncom.2021.667696
  5. FlyWire: online community for whole-brain connectomics. Dorkenwald et al., Nature Methods (2021). 10.1038/s41592-021-01330-0

2020

  1. A connectome and analysis of the adult Drosophila central brain. Scheffer et al., eLife (2020). 10.7554/elife.57443
  2. Auditory activity is diverse and widespread throughout the central brain of Drosophila. Pacheco et al., Nature Neuroscience (2020). 10.1038/s41593-020-00743-y
  3. A Neural Network for Wind-Guided Compass Navigation. Okubo et al., Neuron (2020). 10.1016/j.neuron.2020.06.022
  4. Spatial readout of visual looming in the central brain of Drosophila. Morimoto et al., eLife (2020). 10.7554/elife.57685
  5. The neural basis for a persistent internal state in Drosophila females. Deutsch et al., eLife (2020). 10.7554/elife.59502
  6. The natverse, a versatile toolbox for combining and analysing neuroanatomical data. Bates et al., eLife (2020). 10.7554/eLife.53350

2019

  1. A neural circuit arbitrates between perseverance and withdrawal in hungry Drosophila. Sayin et al., Neuron (2019). 10.1101/259119
  2. Automated Reconstruction of a Serial-Section EM Drosophila Brain with Flood-Filling Networks and Local Realignment. Li et al., bioRxiv (2019). 10.1101/605634
  3. Functional and Anatomical Specificity in a Higher Olfactory Centre. Frechter et al., eLife (2019). 10.7554/eLife.44590
  4. Neurogenetic dissection of the Drosophila innate olfactory processing center. Dolan et al., eLife (2019). 10.1101/404277
  5. Neural Evolution of Context-Dependent Fly Song. Ding et al., Curr Biol (2019). 10.1016/j.cub.2019.02.019
  6. The making of an olfactory specialist. Auer et al., bioRxiv (2019). 10.1101/546507

2018

  1. A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster. Zheng et al., Cell (2018). 10.1016/j.cell.2018.06.019
  2. Functional architecture of reward learning in mushroom body extrinsic neurons of larval Drosophila. Saumweber et al., Nat Commun (2018). 10.1038/s41467-018-03130-1
  3. The Organization of Projections from Olfactory Glomeruli onto Higher-Order Neurons. Jeanne et al., Neuron (2018). 10.1016/j.neuron.2018.05.011
  4. Neural circuit basis of aversive odour processing in Drosophila from sensory input to descending output.. Huoviala et al., bioRxiv (2018). 10.1101/394403
  5. Communication from Learned to Innate Olfactory Processing Centers Is Required for Memory Retrieval in Drosophila. Dolan et al., Neuron (2018). 10.1016/j.neuron.2018.08.037
  6. Connecting Neural Codes with Behavior in the Auditory System of Drosophila. Clemens et al., Neuron (2018). 10.1016/j.neuron.2017.12.033
  7. Olfactory Neurons and Brain Centers Directing Oviposition Decisions in Drosophila. Chin et al., Cell Rep (2018). 10.1016/j.celrep.2018.07.018
  8. An unbiased template of the Drosophila brain and ventral nerve cord. Bogovic et al., bioRxiv (2018). 10.1101/376384

2017

  1. Second-Generation Drosophila Chemical Tags: Sensitivity, Versatility, and Speed. Sutcliffe et al., Genetics (2017). 10.1534/genetics.116.199281
  2. Evolution of Acid-Sensing Olfactory Circuits in Drosophilids. Prieto-Godino et al., Neuron (2017). 10.1016/j.neuron.2016.12.024
  3. The complete connectome of a learning and memory centre in an insect brain. Eichler et al., Nature (2017). 10.1038/nature23455

2016

  1. Automatic Segmentation of Drosophila Neural Compartments Using GAL4 Expression Data Reveals Novel Visual Pathways. Panser et al., Curr Biol (2016). 10.1016/j.cub.2016.05.052
  2. NBLAST: Rapid, Sensitive Comparison of Neuronal Structure and Construction of Neuron Family Databases. Costa et al., Neuron (2016). 10.1016/j.neuron.2016.06.012

2014

  1. Combining genome-scale Drosophila 3D neuroanatomical data by bridging template brains. Manton et al., bioRxiv (2014). 10.1101/006353

2013

  1. A bidirectional circuit switch reroutes pheromone signals in male and female brains. Kohl et al., Cell (2013). 10.1016/j.cell.2013.11.025

2011

  1. Complementary function and integrated wiring of the evolutionarily distinct Drosophila olfactory subsystems. Silbering et al., J Neurosci (2011). 10.1523/JNEUROSCI.2360-11.2011
  2. An olfactory receptor for food-derived odours promotes male courtship in Drosophila. Grosjean et al., Nature (2011). 10.1038/nature10428

2010

  1. Cellular organization of the neural circuit that drives Drosophila courtship behavior. Yu et al., Curr Biol (2010). 10.1016/j.cub.2010.08.025
  2. Sexual dimorphism in the fly brain. Cachero et al., Curr Biol (2010). 10.1016/j.cub.2010.07.045

2007

  1. Comprehensive maps of Drosophila higher olfactory centers: spatially segregated fruit and pheromone representation. Jefferis et al., Cell (2007). 10.1016/j.cell.2007.01.040

0

  1. The Receptor Basis of Serotonergic Modulation in an Olfactory Network. Sizemore, Unknown journal (0). 10.33915/etd.8318
  2. Mechanisms of robust feature extraction in early visual processing. Sebastian Mauricio, Unknown journal (0). 10.53846/goediss-461
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